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Epigenetics

Getting started guides

Two-page image of the targeted sequencing getting started guideGetting started guide

A guide to targeted sequencing with Oxford Nanopore

This guide provides an introduction to performing targeted nanopore sequencing.
Two-page overview of the human genomics getting started guideGetting started guide

A guide to human genomics with Oxford Nanopore

This guide introduces how to sequence human genomes with Oxford Nanopore, from the construction of new, highly complete reference assemblies to the comprehensive identification of variants.
Two-page image of the methylation getting started guideGetting started guide

A guide to investigating methylation in the human genome

This guide provides an introduction to the direct sequencing of DNA methylation in human genomes.

Workflow overviews

Screenshot of the first two pages of the RNA workflowWorkflow overview

Detecting isoforms and RNA modifications with PCR-free, direct RNA nanopore sequencing

This end-to-end workflow provides a simple method to characterise RNA modifications from a human blood research sample using direct RNA sequencing.
Workflow overview

Characterising genomic and epigenomic variation between tumour-normal research samples using long nanopore sequencing reads

This end-to-end workflow overview provides a simple solution for detecting a wide range of tumour-specific variation in a single sequencing assay.
Image preview of the 24-hour human whole-genome sequencing workflow overviewWorkflow overview

Rapid identification of pathogenic variants and methylation with whole-genome Oxford Nanopore sequencing​​

This end-to-end workflow introduces how to perform rapid whole-genome human variant and methylation calling from a blood research sample using high-output DNA sequencing on PromethION 24.
Image of plant assembly workflowWorkflow overview

Assembling high-quality plant genomes with Oxford Nanopore

This end-to-end workflow introduces how to generate a high-quality plant genome assembly from a leaf sample.
Image preview of the large cohorts workflow overviewWorkflow overview

Accelerating clinical research with Oxford Nanopore large cohort sequencing

This end-to-end workflow provides a scalable solution for genome-wide analysis of genomic and epigenomic variants across a large cohort of human research samples with Oxford Nanopore sequencing.

Most viewed

Multiomics two-page spreadBrochure

Multiomic nanopore sequencing: revolutionising human disease research

Find out how multiomic nanopore sequencing can accelerate your disease research using a single platform.
Two-page image of the methylation detection flyerBrochure

Accelerate your epigenetics research with Oxford Nanopore sequencing

In this flyer, find out how Oxford Nanopore sequencing uncovers the complete methylome and provides highly accurate and comprehensive base modification data for analysis.
Two-page spread of the rapid WGS flyerBrochure

Oxford Nanopore 24-hour whole-genome sequencing for paediatric rare disease research

Discover how the Oxford Nanopore rapid whole-genome sequencing workflow is delivering fast, actionable results in 24 hours from sample collection.
Image of EPI2ME brochureBrochure

EPI2ME: data analysis for all levels of expertise

Discover EPI2ME and how it provides data analysis for all levels of expertise
Application note: Hereditary Cancer Panel — 2 pagesApplication note

Comprehensive genomic and epigenomic profiling with the Oxford Nanopore Hereditary Cancer Panel

In this application note, we present the design and performance of the Oxford Nanopore Hereditary Cancer Panel targeting 258 key genes implicated in cancer predisposition.

White paper: RNA sequencing — 2 pagesWhite paper

Unlocking RNA biology with full-length reads

Discover how nanopore sequencing uniquely captures full-length transcripts for isoform-level transcriptome characterisation.
Visualisation of an RNA strand with glowing orange sections in the backgroundCase study

Large-cohort cDNA sequencing advances multiomic insights into neurodegenerative disease

In this case study, discover how Kimberley Billingsley and her colleagues at the National Institutes of Health are using Oxford Nanopore large-cohort cDNA sequencing to research the human brain transcriptome, enhancing understanding of the drivers of neurodegenerative diseases.
Choose_the_right_human_whole-genome_sequencing_workflowEvent video

From speed to scale: how do I choose the right human whole-genome sequencing workflow for my experiment?

In this masterclass, find the right human whole-genome sequencing workflow to meet your experimental goals. We’ll cover whole-genome analysis in just 24 hours through to scaling sequencing for large cohort research. In this masterclass, discover: • How Oxford Nanopore sequencing is advancing human g
Analyse_Oxford_Nanopore_sequencing_data_without_specialist_trainingEvent video

How do I analyse my Oxford Nanopore sequencing data without specialist training?

In this beginner-friendly masterclass, discover how to analyse your Oxford Nanopore sequencing data. Find out how basecalling works, the common file formats you’ll encounter, and how to use MinKNOW to set up and monitor your sequencing run. Then, discover how to analyse your data with EPI2ME — no pr
Which_library_prep_workflow_is_right_for_my_experimentEvent video

Which library prep workflow is right for my experiment?

Whether you’re sequencing DNA, RNA, or cDNA, a single sample or many in multiplex, there’s an Oxford Nanopore library prep kit for you. In this masterclass, discover how to choose the right one for your workflow. In this masterclass, discover: • The range of Oxford Nanopore library prep solutions av

Protocols

Ligation-Sequencing-Kit SQK-LSK110

DNA连接法建库 V14(SQK-LSK114) (1)

This protocol describes how to carry out preparation and sequencing of a human cfDNA sample using the Ligation Sequencing Kit V14 (SQK-LSK114). Typically, we obtain ~50 Gb of aligned data (15x coverage) for human cfDNA samples processed with this protocol.
native-barcoding-kit 3

Human cfDNA multiplex sequencing from blood using SQK-NBD114.24

This protocol describes how to carry out preparation and sequencing of 12 human cell-free DNA (cfDNA) samples using the Native Barcoding Kit 24 V14 (SQK-NBD114.24). Typically, we obtain ~3 Gb of aligned data (1x coverage) for each of the 12 human cfDNA samples processed with this protocol.

Reduced representation methylation sequencing (RRMS) from cells using SQK-LSK114

For Research Use Only. Document version: RRMS_9180_v114_revM_19Sep2025

使用 SQK-NBD114.24 进行简化甲基化测序(RRMS)

仅供研究使用。

Analysis workflows

wf-metagenomics

This workflow can be used for the taxonomic classification of metagenomic sequencing data.


Latest research

Poster on D4Z4 array characterisation in FSHD, featuring sequencing data, charts, and a DNA visual by Oxford Nanopore Technologies.Poster

Structural and epigenetic characterisation of D4Z4 arrays in FSHD using Oxford Nanopore multiomic sequencing

Find out how Oxford Nanopore sequencing reveals genetic and epigenetic variation to characterise FSHD.
cancer stillResearch presentation

Accelerating precision oncology: Real-time genomic and epigenomic profiling with Oxford Nanopore

Presented at AACR 2026, this recording demonstrates how rapid molecular insights can be leveraged to inform clinical decision-making and advance time-critical cancer care.
Structural variationsResearch presentation

The African Cancer Atlas: Advancing precision oncology through genomic diversity

In this webinar, our expert speakers will show how large-scale cancer genome—across nine African countries—is uncovering population-specific variation and epigenetic signals, that could influence biomarker discovery, drug development, and the future of inclusive precision cancer care.
Oxford Nanopore for methylation analysisPublication

Comparison of nanopore sequencing, Methylation EPIC array, and EM-Seq for DNA methylation detection

Publication: Comparison of nanopore sequencing, Methylation EPIC array, and EM-Seq for DNA methylation detection
Tomek DobrzyckiWebinar

Masterclass: How to call variants and methylation across the human genome | LC25

Explore Oxford Nanopore’s ultra-rich multiomic workflows for comprehensive human variation analysis — including SNVs, structural variants, methylation, STRs, CNVs, and phasing. In this masterclass, you will learn: How to obtain multiomic data from a single sequencing run The sample-t

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