SNVs and phasing
Getting started guides
)
A guide to targeted sequencing with Oxford Nanopore
This guide provides an introduction to performing targeted nanopore sequencing.
)
A guide to human genomics with Oxford Nanopore
This guide introduces how to sequence human genomes with Oxford Nanopore, from the construction of new, highly complete reference assemblies to the comprehensive identification of variants.
)
A guide to single-cell transcriptomics with Oxford Nanopore
This guide introduces the single-cell RNA nanopore sequencing workflow, for ultra-rich data without compromise.
Workflow overviews
)
Characterising genomic and epigenomic variation between tumour-normal research samples using long nanopore sequencing reads
This end-to-end workflow overview provides a simple solution for detecting a wide range of tumour-specific variation in a single sequencing assay.
)
Rapid identification of pathogenic variants and methylation with whole-genome Oxford Nanopore sequencing
This end-to-end workflow introduces how to perform rapid whole-genome human variant and methylation calling from a blood research sample using high-output DNA sequencing on PromethION 24.
)
Real-time enrichment of a comprehensive pharmacogenomic panel with Oxford Nanopore sequencing
This end-to-end workflow introduces how to enrich a comprehensive panel of PGx targets with real-time targeted Oxford Nanopore sequencing.
)
Accelerating clinical research with Oxford Nanopore large cohort sequencing
This end-to-end workflow provides a scalable solution for genome-wide analysis of genomic and epigenomic variants across a large cohort of human research samples with Oxford Nanopore sequencing.
)
Comprehensive human genomic variant and methylation analysis with long Oxford Nanopore reads
This end-to-end workflow provides a scalable method to identify previously hidden and potentially pathogenic variants.
Most viewed
)
Pharmacogenomic Oxford Nanopore sequencing of the Twist Alliance Long-Read PGx Panel
Discover how the Oxford Nanopore and Twist Bioscience pharmacogenomic research workflow delivers PGx sequencing without compromise.
)
Accelerate your epigenetics research with Oxford Nanopore sequencing
In this flyer, find out how Oxford Nanopore sequencing uncovers the complete methylome and provides highly accurate and comprehensive base modification data for analysis.
)
Hereditary Cancer Panel: targeted sequencing via adaptive sampling
In this flyer, discover how to utilise the Oxford Nanopore Hereditary Cancer Panel to investigate 258 key genes associated with hereditary cancer risk.
)
Oxford Nanopore 24-hour whole-genome sequencing for paediatric rare disease research
Discover how the Oxford Nanopore rapid whole-genome sequencing workflow is delivering fast, actionable results in 24 hours from sample collection.
)
EPI2ME: data analysis for all levels of expertise
Discover EPI2ME and how it provides data analysis for all levels of expertise
Featured resources
)
High-quality bacterial genomes without the complexity
In this case study, researchers show that near-complete bacterial genomes can be assembled using nanopore sequencing alone.
)
From full-length 16S to high-resolution metagenomics: how do I choose the right microbial community workflow for my experiment?
In this masterclass, find the right microbial community sequencing workflow to meet your experimental goals. We’ll cover microbial identification from full-length 16S/ITS sequencing through to comprehensive metagenomic assembly. In this masterclass, discover: • How Oxford Nanopore sequencing deliver
)
From speed to scale: how do I choose the right human whole-genome sequencing workflow for my experiment?
In this masterclass, find the right human whole-genome sequencing workflow to meet your experimental goals. We’ll cover whole-genome analysis in just 24 hours through to scaling sequencing for large cohort research. In this masterclass, discover: • How Oxford Nanopore sequencing is advancing human g
)
How do I analyse my Oxford Nanopore sequencing data without specialist training?
In this beginner-friendly masterclass, discover how to analyse your Oxford Nanopore sequencing data. Find out how basecalling works, the common file formats you’ll encounter, and how to use MinKNOW to set up and monitor your sequencing run. Then, discover how to analyse your data with EPI2ME — no pr
)
Which library prep workflow is right for my experiment?
Whether you’re sequencing DNA, RNA, or cDNA, a single sample or many in multiplex, there’s an Oxford Nanopore library prep kit for you. In this masterclass, discover how to choose the right one for your workflow. In this masterclass, discover: • The range of Oxford Nanopore library prep solutions av
Protocols
Analysis workflows
Latest research
)
Digital panels enable targeted enrichment of haematological cancer-associated genomic regions during sequencing
Discover how nanopore sequencing with Adaptive Sampling can target cancer-associated genes from blood-derived and bone marrow-derived DNA.
)
Oxford Nanopore Adaptive Sampling for tumour-only SNV, SV, and CNV profiling in one assay
Discover how nanopore sequencing with Adaptive Sampling reveals tumour-only SNVs, SVs, and CNVs in one assay.
)
Masterclass: How to sequence full-length plasmids in your own lab | LC25
Discover how to perform on-demand sequencing of full-length plasmids securely in your own lab, using a complete sample-to-answer workflow with Oxford Nanopore technology.
In this masterclass, you will learn:
How Oxford Nanopore sequencing delivers accurate, flexible, and secure plasmid c
)
Masterclass: How to call variants and methylation across the human genome | LC25
Explore Oxford Nanopore’s ultra-rich multiomic workflows for comprehensive human variation analysis — including SNVs, structural variants, methylation, STRs, CNVs, and phasing.
In this masterclass, you will learn:
How to obtain multiomic data from a single sequencing run
The sample-t
)
End-to-end workflow for haplotype-resolved genetic and epigenetic variant calling using Oxford Nanopore sequencing
Comprehensive identification and interpretation of single nucleotide variants (SNVs), structural variants (SVs), copy number variants (CNVs), and epigenetic modifications from a single PromethION Flow Cell.
