Resource Centre
Workflow 
Workflow overview: direct RNA sequencing
Bioinformatics tool 
Two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing
Case study 
Case study: the potential of nanopore cell-free RNA sequencing for earlier cancer detection
Bioinformatics tool TALC: Transcription-Aware Long Read Correction
Bioinformatics tool 
Swan: a library for the analysis and visualization of long-read transcriptomes
Bioinformatics tool 
S-IRFindeR: stable and accurate measurement of intron retention
Bioinformatics tool 
Reference-free reconstruction and quantification of transcriptomes from long-read sequencing
Video 
Quality control of gene therapy vectors using nanopore direct RNA sequencing
Case study 
Case study: powered by long nanopore reads, liver transcriptome analysis reveals new clues about cancer
Case study 
Case study: mapping RNA modifications in the human brain with full-length transcript sequencing
Bioinformatics tool 
LoRTIA – The Long-read RNA-Seq Transcript Isoform Annotator Toolkit
Video 
Long-read transcriptomics shows synaptic adaptation to amyloid pathology in Alzheimer’s
Video 
Long-read CaptureSeq identifies novel RNA isoforms of psychiatric risk genes
Bioinformatics tool 
The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read tools
Video 
London Calling 2024 technology update
Bioinformatics tool 
LIQA: Long-read Isoform Quantification and Analysis
Bioinformatics tool IsoTV: processing and visualizing functional features of translated transcript isoforms
Video 
Isopod: detecting differential isoform usage from long-read single-cell data
Video 
Igniting single-cell analysis of full-length RNA isoforms in brain development
Getting started guide 
Getting started guide: single-cell transcriptomics
