Resource Centre
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Yaniv Erlich: A vision for Ubiquitous Sequencing
- Water testing
- Real-time
- WIMP
- MinION
- Monitoring
- Forensics
January 1 2014
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Workflow overview: 16S sequencing
- Water testing
- 16S
- Bacteria
- Food safety
- Environment
- Identification
June 13 2024
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Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter
- Water testing
- Microbiology
- Bacteria
- AMR
- Whole genome
- Assembly
April 9 2020
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The wastewater microbiome: A novel insight for COVID-19 surveillance
- Water testing
- Bioinformatics
- Microbiology
- Microbiome
- Metagenomics
- Infectious disease
October 9 2020
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Case study: tackling poliovirus outbreaks and eliminating cell-culture detection methods with nanopore technology
- Water testing
- Amplicons
- GridION
- High-throughput
- Infectious disease
- Virus
August 28 2024
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Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing
- Water testing
- Microbiology
- AMR
- MinION
- Portable
- gDNA
July 4 2017
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Phenotypic characterization and whole-genome analysis of a novel bacteriophage HCF1 infecting Citrobacter amalonaticus and C. freundii
- Water testing
- Microbiology
- Bacteria
- Virus
- Whole genome
- Assembly
January 25 2021
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Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae
- Water testing
- Microbiology
- Bacteria
- Agriculture: animal
- Environment
- DNA
July 23 2020
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Nanopore-based long-read metagenomics uncover the resistome intrusion by antibiotic resistant bacteria from treated wastewater in receiving water body
- Water testing
- Clinical research
- Microbiology
November 14 2022
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Monitoring SARS-CoV-2 variants alterations in Nice neighborhoods by wastewater nanopore sequencing
- Water testing
- Infectious disease
- Outbreak
- Monitoring
- PromethION
- Amplicons
July 9 2021
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Metagenomic profiling of microbial pathogens in the Little Bighorn River, Montana
- Water testing
- Microbiology
- Metagenomics
- Environment
- MinION
March 27 2019
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Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in a Dutch drinking water treatment plant
- Water testing
- Microbiology
- Metagenomics
- Bacteria
- Environment
- DNA
May 20 2020
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Metagenomic characterization of a harmful algal bloom using nanopore sequencing
- Water testing
- Microbiology
- Metagenomics
- Environment
- MinION
- Identification
November 15 2020
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function
- Water testing
- Microbiology
- Metagenomics
- Environment
- MinION
- Identification
June 10 2020
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Liquid co-substrates repower sewage microbiomes
- Water testing
- Microbiome
- Microbiology
- 16S
- Industrial diagnostics
February 16 2018
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How MinION sequencing is helping us solve real-life environmental biotechnology issues
- Water testing
- London Calling
- Microbiology
- Environment
May 24 2018
Haploflow: Strain-resolved de novo assembly of viral genomes
- Water testing
- Microbiology
- Virus
- Assembly
- Whole genome
- Bioinformatics
January 26 2021
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Genomic network analysis of an environmental and livestock IncF plasmid population
- Water testing
- Microbiology
- Bacteria
- Agriculture: animal
- Environment
- DNA
July 24 2020
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Edward DeLong - No assembly required: Single nanopore reads yield complete virus genome sequences from naturally occurring microbial community DNA
- Water testing
- Nanopore Community Meeting
- Microbiology
- Metagenomics
- GridION
- Environment
December 5 2018
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Determining genotype and antimicrobial resistance of Salmonella Typhi in environmental samples by amplicon sequencing
- Water testing
- Infectious disease
- AMR
- Targeted
- Amplicons
- MinION
July 8 2025
