Resource Centre
Bioinformatics tool )
WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates
Video )
Shaking up the short reads - using MinION sequencing to enhance an outbreak investigation
Video )
Reliable whole-genome genotyping for bacterial surveillance using nanopore sequencing data
Publication )
Real-time genomic pathogen, resistance, and host range characterisation from passive water sampling of wetland ecosystems
Bioinformatics tool )
Reads2Resistome: An adaptable and high-throughput whole-genome sequencing pipeline for bacterial resistome characterization
Bioinformatics tool )
Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis
Case study )
Case study: rapid, accurate characterisation of foodborne Salmonella isolates with nanopore sequencing
Application note )
Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome
Case study )
Case study: nanopore sequencing improves surveillance of serious respiratory diseases and characterises the causative agents
Publication )
Nanopore metagenomic sequencing links clinically relevant resistance determinants to pathogens
Bioinformatics tool )
NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomes
Video )
Metagenomics of India's largest River Ganges confluence at Prayagraj, India using MinION sequencing
Bioinformatics tool )
KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes via nanopore sequencing
Bioinformatics tool )
Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs
Publication )
Improving local diagnostic capacity for microbiological identification and antimicrobial resistance gene detection in Northern Nigeria using nanopore
Video )
Portable 16S rRNA sequencing for antimicrobial stewardship
Video )
How MinION is Changing my Research in Infectious Diseases Diagnostics
Video )
Evaluating the extensively drug-resistant Klebsiella pneumoniae resistome via MinION direct RNA sequencing
Video )
EPI2ME ARMA workflow: real-time antimicrobial resistance profiling
Publication )
Clinical validation and utility of targeted nanopore sequencing for rapid pathogen diagnosis and precision therapy in lung cancer patients
