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Oxford Nanopore Technologies

David Yarmosh

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Job title
Institution
ATCC, USA
Biography

David Yarmosh is a lead bioinformatician in the ATCC Sequencing and Bioinformatics Center. His work with Oxford Nanopore Technologies data began with real-time metagenomic sequencing analysis, researching a method to identify organisms within 24 hours of sampling in a field-forward setting. He built a small toolkit that took advantage of the MinION streaming output to produce taxonomic identification as reads were generated. He has since published broadscale interplatform SARS-COV-2 variant determination and reference-grade hybrid microbial assembly. His interests lie in identifying limitations within data, hardware, and software and finding optimizations that suit the constraints of projects, budgets, and time.

Recent publications

Yarmosh, D. A. et al. Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies. mSphere 29;7(3) (2022).
DOI: 10.1128/msphere.00077-22

Talks at this conference