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23 results

Water testing

Publication
Yaniv Erlich: A vision for Ubiquitous Sequencing
January 1 2014
Workflow
Workflow overview: 16S sequencing
September 25 2025
Publication
Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter
April 9 2020
Publication
The wastewater microbiome: A novel insight for COVID-19 surveillance
October 9 2020
Case study
Case study: tackling poliovirus outbreaks and eliminating cell-culture detection methods with nanopore technology
August 28 2024
Publication
Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing
July 4 2017
Publication
Phenotypic characterization and whole-genome analysis of a novel bacteriophage HCF1 infecting Citrobacter amalonaticus and C. freundii
January 25 2021
Publication
Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae
July 23 2020
Publication
Nanopore-based long-read metagenomics uncover the resistome intrusion by antibiotic resistant bacteria from treated wastewater in receiving water body
November 14 2022
Publication
Monitoring SARS-CoV-2 variants alterations in Nice neighborhoods by wastewater nanopore sequencing
July 9 2021
Publication
Metagenomic profiling of microbial pathogens in the Little Bighorn River, Montana
March 27 2019
Publication
Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in a Dutch drinking water treatment plant
May 20 2020
Publication
Metagenomic characterization of a harmful algal bloom using nanopore sequencing
November 15 2020
Publication
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function
June 10 2020
Publication
Liquid co-substrates repower sewage microbiomes
February 16 2018
Video
How MinION sequencing is helping us solve real-life environmental biotechnology issues
May 24 2018
Bioinformatics tool
Haploflow: Strain-resolved de novo assembly of viral genomes
January 26 2021
Publication
Genomic network analysis of an environmental and livestock IncF plasmid population
July 24 2020
Video
Edward DeLong - No assembly required: Single nanopore reads yield complete virus genome sequences from naturally occurring microbial community DNA
December 5 2018
Publication
Determining genotype and antimicrobial resistance of Salmonella Typhi in environmental samples by amplicon sequencing
July 8 2025

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Resource Centre

Yaniv Erlich: A vision for Ubiquitous Sequencing

Workflow overview: 16S sequencing

Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter

The wastewater microbiome: A novel insight for COVID-19 surveillance

Case study: tackling poliovirus outbreaks and eliminating cell-culture detection methods with nanopore technology

Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing

Phenotypic characterization and whole-genome analysis of a novel bacteriophage HCF1 infecting Citrobacter amalonaticus and C. freundii

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

Nanopore-based long-read metagenomics uncover the resistome intrusion by antibiotic resistant bacteria from treated wastewater in receiving water body

Monitoring SARS-CoV-2 variants alterations in Nice neighborhoods by wastewater nanopore sequencing

Metagenomic profiling of microbial pathogens in the Little Bighorn River, Montana

Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in a Dutch drinking water treatment plant

Metagenomic characterization of a harmful algal bloom using nanopore sequencing

Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function

Liquid co-substrates repower sewage microbiomes

How MinION sequencing is helping us solve real-life environmental biotechnology issues

Haploflow: Strain-resolved de novo assembly of viral genomes

Genomic network analysis of an environmental and livestock IncF plasmid population

Edward DeLong - No assembly required: Single nanopore reads yield complete virus genome sequences from naturally occurring microbial community DNA

Determining genotype and antimicrobial resistance of Salmonella Typhi in environmental samples by amplicon sequencing

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