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382 results

Microbial genomics

Publication
Yaniv Erlich: A vision for Ubiquitous Sequencing
January 1 2014
Workflow
Workflow overview: mpox virus sequencing
July 9 2025
Workflow
Workflow overview: whole-plasmid sequencing
April 10 2025
Workflow
Workflow overview: pathogen metagenomics
March 18 2025
Workflow
Workflow overview: microbial amplicon barcoding
September 25 2025
Workflow
Workflow overview: NO-MISS
April 16 2026
Workflow
Workflow overview: 16S sequencing
September 25 2025
Publication
Whole genome sequencing for rapid characterization of rabies virus using nanopore technology
August 18 2023
Video
Whole-genome sequencing in PulseNet foodborne molecular surveillance systems
May 24 2024
Bioinformatics tool
Whole-Genome Sequencing of a Human Clinical Isolate of emm28 Streptococcus pyogenes Causing Necrotizing Fasciitis Acquired Contemporaneously with Hurricane Harvey
November 13 2017
Publication
Whole-genome nanopore sequencing and automatic downstream analysis of respiratory syncytial virus using RSVTyper
October 31 2025
Publication
Whole genome assembly of a hybrid Trypanosoma cruzi strain assembled with nanopore sequencing alone
April 9 2024
Poster
Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
June 20 2019
Publication
WGS of a cluster of MDR Shigella sonnei utilising Oxford Nanopore R10.4.1 long-read sequencing
November 15 2023
Bioinformatics tool
WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates
June 7 2021
Video
OnRamp – rapid multiplexed validation of plasmids using nanopore sequencing
August 18 2023
Video
Low cost nanopore sequencing in a front-line clinical microbiology laboratory without on-site bioinformaticians
October 12 2023
Video
Generating microbial insights from nanopore metagenomic data using an open-source, cloud-based metagenomics tool for researchers
May 12 2023
Video
Generating complete, reference quality microbial genomes with 'nanopore only' metagenomic sequencing
May 3 2023
Video
Environmental DNA sequencing with Oxford Nanopore: in the lab and in the field
January 27 2023

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Resource Centre

Yaniv Erlich: A vision for Ubiquitous Sequencing

Workflow overview: mpox virus sequencing

Workflow overview: whole-plasmid sequencing

Workflow overview: pathogen metagenomics

Workflow overview: microbial amplicon barcoding

Workflow overview: NO-MISS

Workflow overview: 16S sequencing

Whole genome sequencing for rapid characterization of rabies virus using nanopore technology

Whole-genome sequencing in PulseNet foodborne molecular surveillance systems

Whole-Genome Sequencing of a Human Clinical Isolate of emm28 Streptococcus pyogenes Causing Necrotizing Fasciitis Acquired Contemporaneously with Hurricane Harvey

Whole-genome nanopore sequencing and automatic downstream analysis of respiratory syncytial virus using RSVTyper

Whole genome assembly of a hybrid Trypanosoma cruzi strain assembled with nanopore sequencing alone

Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing

WGS of a cluster of MDR Shigella sonnei utilising Oxford Nanopore R10.4.1 long-read sequencing

WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates

OnRamp – rapid multiplexed validation of plasmids using nanopore sequencing

Low cost nanopore sequencing in a front-line clinical microbiology laboratory without on-site bioinformaticians

Generating microbial insights from nanopore metagenomic data using an open-source, cloud-based metagenomics tool for researchers

Generating complete, reference quality microbial genomes with 'nanopore only' metagenomic sequencing

Environmental DNA sequencing with Oxford Nanopore: in the lab and in the field

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